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3D Slicer segmentation recipes

Recipes for common medical image segmentation tasks using 3D Slicer

Overview

Prerequisites

Tips:

Example

Fading between baseline and contrast images. Significant patient motion is visible.

Fading between baseline and aligned contrast images. Patient motion is reduced.

Subtraction image

Vesselness filtering preview - with default parameters

Vesselness filtering preview - with increased plate suppression

Vesselness filtering final result

Thresholding settings

Show 3D

Final result with threshold = 0.07:

Animation of final result with threshold = 0.07.

Final result with threshold = 0.15:

Animation of final result with threshold = 0.15.