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3D Slicer segmentation recipes

Recipes for common medical image segmentation tasks using 3D Slicer





Fading between baseline and contrast images. Significant patient motion is visible.

Fading between baseline and aligned contrast images. Patient motion is reduced.

Subtraction image

Vesselness filtering preview - with default parameters

Vesselness filtering preview - with increased plate suppression

Vesselness filtering final result

Thresholding settings

Show 3D

Final result with threshold = 0.07:

Animation of final result with threshold = 0.07.

Final result with threshold = 0.15:

Animation of final result with threshold = 0.15.